1. Download Lysine Modification Data

2. Download Annotations

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1. Download Lysine Modification Data (Total)

All the Lysine Modification Sites and Reference Sequences of modified proteins can be downloaded for species and for modification types by clicking on the name of PLM or species.

<1> Download Lysine Modification Data by Modification Types

Ub/Ubl
Ubiquitination	Sumoylation	Pupylation	Neddylation
Acylation
Acetylation	Succinylation	Crotonylation	Malonylation
2-Hydroxyisobutyrylation	β-Hydroxybutyrylation	Butyrylation	Propionylation
Glutarylation	Lactylation	Formylation	Benzoylation
HMGylation	MGcylation	MGylation
Others
Methylation	Glycation	Hydroxylation	Phosphoglycerylation
Carboxymethylation	Lipoylation	Carboxylation	Dietylphosphorylation
Biotinylation	Carboxyethylation

<2> Download Lysine Modification Data by Species

Model Organisms
Homo sapiens	Mus musculus	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Rattus norvegicus
Escherichia coli (strain K12)	Drosophila melanogaster	Arabidopsis thaliana	Danio rerio
Other Organisms
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 or DSM 30187 or JCM 1027 or KCTC 2358 or NCIMB 9240)	Bacillus subtilis (strain 168)	Bacillus velezensis UCMB5033	Camellia sinensis var. sinensis
Candida albicans (strain SC5314 or ATCC MYA-2876)	Cryptococcus neoformans var. grubii serotype A (strain H99 or ATCC 208821 or CBS 10515 or FGSC 9487)	Emericella nidulans (strain FGSC A4 or ATCC 38163 or CBS 112.46 or NRRL 194 or M139)	Magnaporthe oryzae (strain 70-15 or ATCC MYA-4617 or FGSC 8958)
Magnaporthe oryzae	Mycobacterium tuberculosis (strain ATCC 25618 or H37Rv)	Neosartorya fumigata (strain ATCC MYA-4609 or Af293 or CBS 101355 or FGSC A1100)	Nicotiana tabacum
Oryza sativa subsp. japonica	Yarrowia lipolytica (strain CLIB 122 or E 150)	Phytophthora sojae (strain P6497)	Plasmodium falciparum (isolate 3D7)
Saccharomyces cerevisiae (strain ATCC 204508 or S288c)	Schistosoma japonicum	Shewanella baltica (strain OS155 or ATCC BAA-1091)	Spiroplasma eriocheiris
Sulfolobus islandicus (strain REY15A)	Sus scrofa	Triticum aestivum	Others

2. Download Annotations

The annotation data sets in Tab-delimited format can be downloaded by clicking on the name of database or tool.

Variation and mutation
COSMIC	ICGC	TCGA	dbSNP	Varcards
KinaseMD	IntOGen	BioMuta	GWASdb	ActiveDriverDB
Disease-associated information
PTMD	ActiveDriverDB	BioMuta	OMIM	HGV&TB
MSV3d	NECTAR	ClinVar	GWASdb	MSDD
DiseaseEnhancer	DisGeNET
Protein-protein interaction
iRefIndex	Mentha	DifferentialNet	TIMBAL	MIST
IID	HIPPIE	PINA	HINT	inBio MapTM
STRING	HPRD	BioGRID
Protein function
DrLLPS	THANATOS	iEKPD	iUUCD	CGDB
WERAM	AmyPro	MultitaskProtDB-II	GPCRdb	MeDReaders
neXtProt	CORUM	HAMAP	CellMarker	MoonDB
Membranome	AnimalTFDB 3.0	EuRBPDB	ATtRACT	TISSUES 2.0
PlantTFDB 4.0	PTMcode 2.0
DNA & RNA element
miRTarBase	TargetScanHuman	miRWalk	miRcode	LncRNADisease
somamiR	RISE	RNAInter	miRecords	circBase
RAIN	UTRdb	RegNetwork	TRRUST	YTRP
Protein structural annotation
PDB	MMDB	SCOP	DNAproDB	MobiDB 3.0
Chemical-target relation
CTD	DrugBank	DGIdb 3.0	TTD	ADReCS-Target
ECOdrug	GtoPdb	BindingDB	DrugCentral	PLIC
mRNA expression
TCGA	ArrayExpress	BioXpress	COSMIC	The Human Protein Atlas
Human Proteome Map	ICGC	TissGDB	TISSUES 2.0
Protein expression/Proteomics
Human Proteome Map	The Human Protein Atlas
Subcellular localization
COMPARTMENTS	ComPPI	NLSdb	MiCroKiTS	Translocatome
Biological pathway
SignaLink	Reactome	KEGG	PathBank
Domain annotation
InterPro	Pfam	PIRSF	PRINTS	PROSITE
Physicochemical property
Compute pI/Mw	AAindex

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